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    Date Issued2004 (1)1998 (1)1997 (1)Author
    Adachi, Kengo (3)
    Harrington, Daniel John (2)Royer, William E. (2)Ali, M. Yusuf (1)Homma, Kazuaki (1)View MoreUMass Chan AffiliationDepartment of Biochemistry and Molecular Pharmacology (2)Department of Physiology (1)Graduate School of Biomedical Sciences (1)Program in Molecular Medicine (1)Document TypeJournal Article (3)KeywordLife Sciences (3)Medicine and Health Sciences (3)*Anemia, Sickle Cell; Computer Simulation; Hemoglobin, Sickle; Humans; Models, Molecular; Molecular Sequence Data; Movement; Polymers; Protein Conformation (1)Actins; Animals; Kinesin; Molecular Motor Proteins; Movement; Myosin Heavy Chains; Myosin Type V; Protein Binding; Rotation (1)Amino Acid Substitution; Crystallography, X-Ray; Glutamic Acid; Hemoglobin, Sickle; Hemoglobins; Humans; Models, Molecular; Molecular Sequence Data; Protein Conformation; Tryptophan (1)View MoreJournalBiophysical journal (1)Journal of molecular biology (1)The Journal of biological chemistry (1)

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    Unconstrained steps of myosin VI appear longest among known molecular motors

    Ali, M. Yusuf; Homma, Kazuaki; Iwane, Atsuko Hikikoshi; Adachi, Kengo; Itoh, Hiroyasu; Kinosita, Kazuhiko; Yanagida, Toshio; Ikebe, Mitsuo (2004-06-11)
    Myosin VI is a two-headed molecular motor that moves along an actin filament in the direction opposite to most other myosins. Previously, a single myosin VI molecule has been shown to proceed with steps that are large compared to its neck size: either it walks by somehow extending its neck or one head slides along actin for a long distance before the other head lands. To inquire into these and other possible mechanism of motility, we suspended an actin filament between two plastic beads, and let a single myosin VI molecule carrying a bead duplex move along the actin. This configuration, unlike previous studies, allows unconstrained rotation of myosin VI around the right-handed double helix of actin. Myosin VI moved almost straight or as a right-handed spiral with a pitch of several micrometers, indicating that the molecule walks with strides slightly longer than the actin helical repeat of 36 nm. The large steps without much rotation suggest kinesin-type walking with extended and flexible necks, but how to move forward with flexible necks, even under a backward load, is not clear. As an answer, we propose that a conformational change in the lifted head would facilitate landing on a forward, rather than backward, site. This mechanism may underlie stepping of all two-headed molecular motors including kinesin and myosin V.
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    Crystal structure of deoxy-human hemoglobin beta6 Glu --> Trp. Implications for the structure and formation of the sickle cell fiber

    Harrington, Daniel John; Adachi, Kengo; Royer, William E. (1998-11-26)
    An atomic-level understanding of the interactions between hemoglobin molecules that contribute to the formation of pathological fibers in sickle cell disease remains elusive. By exploring crystal structures of mutant hemoglobins with altered polymerization properties, insight can be gained into sickle cell hemoglobin (HbS) polymerization. We present here the 2.0-A resolution deoxy crystal structure of human hemoglobin mutated to tryptophan at the beta6 position, the site of the glutamate --> valine mutation in HbS. Unlike leucine and isoleucine, which promote polymerization relative to HbS, tryptophan inhibits polymerization. Our results provide explanations for the altered polymerization properties and reveal a fundamentally different double strand that may provide a model for interactions within a fiber and/or interactions leading to heterogeneous nucleation.
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    The high resolution crystal structure of deoxyhemoglobin S

    Harrington, Daniel John; Adachi, Kengo; Royer, William E. (1997-11-05)
    We have refined the crystal structure of deoxyhemoglobin S (beta Glu6-->Val) at 2.05 A resolution to an R-factor of 16.5% (free R=21. 5%) using crystals isomorphous to those originally grown by Wishner and Love. A predominant feature of this crystal form is a double strand of hemoglobin tetramers that has been shown by a variety of techniques to be the fundamental building block of the intracellular sickle cell fiber. The double strand is stabilized by lateral contacts involving the mutant valine interacting with a pocket between the E and F helices on another tetramer. The new structure reveals some marked differences from the previously refined 3.0 A resolution structure, including several residues in the lateral contact which have shifted by as much as 3.5 A. The lateral contact includes, in addition to the hydrophobic interactions involving the mutant valine, hydrophilic interactions and bridging water molecules at the periphery of the contact. This structure provides further insights into hemoglobin polymerization and may be useful for the structure-based design of therapeutic agents to treat sickle cell disease.
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