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    Date Issued2017 (1)2015 (1)Author
    Lin, Ziqiang (2)
    Bosco, Daryl (1)Brown, Robert H. Jr. (1)Fang, Bin (1)Gao, Fen-Biao (1)View MoreUMass Chan AffiliationDepartment of Molecular Cell and Cancer Biology (1)Department of Neurology (1)Department of Pediatrics, Division of Pulmonary and Allergy (1)Horae Gene Therapy Center (1)Program in Molecular Medicine (1)Document TypeJournal Article (2)KeywordAccuracy (1)Amyotrophic lateral sclerosis (ALS) (1)breast cancer (1)C9ORF72 (1)Cancer Biology (1)View MoreJournalNeuron (1)Oncotarget (1)

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    Value of circulating cell-free DNA analysis as a diagnostic tool for breast cancer: a meta-analysis

    Lin, Ziqiang; Neiswender, James; Fang, Bin; Ma, Xuelei; Zhang, Jing; Hu, Xiuying (2017-04-18)
    OBJECTIVES: The aim of this study was to systematically evaluate the diagnostic value of cell free DNA (cfDNA) for breast cancer. RESULTS: Among 308 candidate articles, 25 with relevant diagnostic screening qualified for final analysis. The mean sensitivity, specificity and area under the curve (AUC) of SROC plots for 24 studies that distinguished breast cancer patients from healthy controls were 0.70, 0.87, and 0.9314, yielding a DOR of 32.31. When analyzed in subgroups, the 14 quantitative studies produced sensitivity, specificity, AUC, and a DOR of 0.78, 0.83, 0.9116, and 24.40. The 10 qualitative studies produced 0.50, 0.98, 0.9919, and 68.45. For 8 studies that distinguished malignant breast cancer from benign diseases, the specificity, sensitivity, AUC and DOR were 0.75, 0.79, 0.8213, and 9.49. No covariate factors had a significant correlation with relative DOR. Deek's funnel plots indicated an absence of publication bias. MATERIALS AND METHODS: Databases were searched for studies involving the use of cfDNA to diagnose breast cancer. The studies were analyzed to determine sensitivity, specificity, positive likelihood ratio, negative likelihood ratio, diagnostic odds ratio (DOR), and the summary receiver operating characteristic (SROC). Covariates were evaluated for effect on relative DOR. Deek's Funnel plots were generated to measure publication bias. CONCLUSIONS: Our analysis suggests a promising diagnostic potential of using cfDNA for breast cancer screening, but this diagnostic method is not yet independently sufficient. Further work refining qualitative cfDNA assays will improve the correct diagnosis of breast cancers.
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    Human C9ORF72 Hexanucleotide Expansion Reproduces RNA Foci and Dipeptide Repeat Proteins but Not Neurodegeneration in BAC Transgenic Mice

    Peters, Owen M.; Toro Cabrera, Gabriela; Tran, Helene; McKeon, Jeanne E.; Metterville, Jake P.; Weiss, Alexandra; Wightman, Nicholas; Salameh, Johnny; Sun, Huaming; Kennedy, Zachary; et al. (2015-12-02)
    A non-coding hexanucleotide repeat expansion in the C9ORF72 gene is the most common mutation associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). To investigate the pathological role of C9ORF72 in these diseases, we generated a line of mice carrying a bacterial artificial chromosome containing exons 1 to 6 of the human C9ORF72 gene with approximately 500 repeats of the GGGGCC motif. The mice showed no overt behavioral phenotype but recapitulated distinctive histopathological features of C9ORF72 ALS/FTD, including sense and antisense intranuclear RNA foci and poly(glycine-proline) dipeptide repeat proteins. Finally, using an artificial microRNA that targets human C9ORF72 in cultures of primary cortical neurons from the C9BAC mice, we have attenuated expression of the C9BAC transgene and the poly(GP) dipeptides. The C9ORF72 BAC transgenic mice will be a valuable tool in the study of ALS/FTD pathobiology and therapy.
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