Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data [preprint]
Bialy, Nikki ; Alber, Frank ; Andrews, Brenda ; Angelo, Michael ; Beliveau, Brian ; Bintu, Lacramioara ; Boettiger, Alistair ; Boehm, Ulrike ; Brown, Claire M ; Maina, Mahmoud Bukar ... show 10 more
Citations
Authors
Alber, Frank
Andrews, Brenda
Angelo, Michael
Beliveau, Brian
Bintu, Lacramioara
Boettiger, Alistair
Boehm, Ulrike
Brown, Claire M
Maina, Mahmoud Bukar
Chambers, James J
Cimini, Beth A
Eliceiri, Kevin
Errington, Rachel
Faklaris, Orestis
Gaudreault, Nathalie
Germain, Ronald N
Goscinski, Wojtek
Grunwald, David
Halter, Michael
Hanein, Dorit
Hickey, John W
Lacoste, Judith
Laude, Alex
Lundberg, Emma
Ma, Jian
Malacrida, Leonel
Moore, Josh
Nelson, Glyn
Neumann, Elizabeth Kathleen
Nitschke, Roland
Onami, Shuichi
Pimentel, Jaime A
Plant, Anne L
Radtke, Andrea J
Sabata, Bikash
Schapiro, Denis
Schöneberg, Johannes
Spraggins, Jeffrey M
Sudar, Damir
Adrien Maria Vierdag, Wouter-Michiel
Volkmann, Niels
Wählby, Carolina
Wang, Siyuan Steven
Yaniv, Ziv
Strambio-De-Castillia, Caterina
Student Authors
Faculty Advisor
Academic Program
UMass Chan Affiliations
Document Type
Publication Date
Keywords
Subject Area
Embargo Expiration Date
Link to Full Text
Abstract
Together with the molecular knowledge of genes and proteins, biological images promise to significantly enhance the scientific understanding of complex cellular systems and to advance predictive and personalized therapeutic products for human health. For this potential to be realized, quality-assured image data must be shared among labs at a global scale to be compared, pooled, and reanalyzed, thus unleashing untold potential beyond the original purpose for which the data was generated. There are two broad sets of requirements to enable image data sharing in the life sciences. One set of requirements is articulated in the companion White Paper entitled "Enabling Global Image Data Sharing in the Life Sciences," which is published in parallel and addresses the need to build the cyberinfrastructure for sharing the digital array data (arXiv:2401.13023 [q-bio.OT], https://doi.org/10.48550/arXiv.2401.13023). In this White Paper, we detail a broad set of requirements, which involves collecting, managing, presenting, and propagating contextual information essential to assess the quality, understand the content, interpret the scientific implications, and reuse image data in the context of the experimental details. We start by providing an overview of the main lessons learned to date through international community activities, which have recently made considerable progress toward generating community standard practices for imaging Quality Control (QC) and metadata. We then provide a clear set of recommendations for amplifying this work. The driving goal is to address remaining challenges, and democratize access to common practices and tools for a spectrum of biomedical researchers, regardless of their expertise, access to resources, and geographical location.
Source
Bialy N, Alber F, Andrews B, Angelo M, Beliveau B, Bintu L, Boettiger A, Boehm U, Brown CM, Maina MB, Chambers JJ, Cimini BA, Eliceiri K, Errington R, Faklaris O, Gaudreault N, Germain RN, Goscinski W, Grunwald D, Halter M, Hanein D, Hickey JW, Lacoste J, Laude A, Lundberg E, Ma J, Malacrida L, Moore J, Nelson G, Neumann EK, Nitschke R, Onami S, Pimentel JA, Plant AL, Radtke AJ, Sabata B, Schapiro D, Schöneberg J, Spraggins JM, Sudar D, Adrien Maria Vierdag WM, Volkmann N, Wählby C, Wang SS, Yaniv Z, Strambio-De-Castillia C. Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. ArXiv [Preprint]. 2024 Feb 8:arXiv:2401.13022v4. PMID: 38351940; PMCID: PMC10862930.
Year of Medical School at Time of Visit
Sponsors
Dates of Travel
DOI
Permanent Link to this Item
PubMed ID
Other Identifiers
Notes
This article is a preprint. Preprints are preliminary reports of work that have not been certified by peer review.