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Design, creation, and use of the Test Us Bank (TUB) COVID-19 sample biorepository

Broach, John
Achenbach, Chad
Behar, Stephanie
O'Connor, Laurel
Tarrant, Seanan
Ferranto, Julia
Wright, Colton
Hartin, Paul
Orwig, Taylor
Nanavati, Janvi
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Abstract

Shortly after the first case of SARS-CoV-2 was diagnosed a public health emergency (PHE) was declared and a multi-agency response was initiated within the US federal government to create and propagate testing capacity. As part of this response, an unprecedented program designated Rapid Acceleration of Diagnostics (RADx) Tech was established by the National Institutes of Health (NIH) to facilitate the development of point-of-care tests for the COVID-19. The RADx Tech Clinical Studies Core (CSC), located at the University of Massachusetts Chan Medical School (UMass Chan), with partnering academic, private, and non-governmental organizations around the country, was tasked with developing clinical studies to support this work. This manuscript details development of a biorepository specifically focused on the collection and storage of samples designed for diagnostic platform development. It highlights the unified collection and annotation process that enabled gathering a diverse set of samples. This diversity encompasses the geography and backgrounds of the participants as well as sample characteristics such as variant type and RT-PCR cycle threshold (CT) value of the corresponding reference sample on a uniform clinical reference platform.

Source

Broach J, Achenbach C, Behar S, O'Connor L, Tarrant S, Ferranto J, Wright C, Hartin P, Orwig T, Nanavati J, Kalibala B, Woods K, Shaw B, Flahive J, Barton B, Hafer N, Herbert C, Fahey N, Gibson L, Simin K, Kowalik T, Ward DV, Mirza AW, Murphy RL, Caputo M, Buchholz B, Fantasia H, Koren A, Marchand L, Oludare S, Sogade F, Ritland D, Davis C, Grenier A, Baron C, Brent E, McKenney JB, Elder N, Michaels L, Ferrara L, Theron G, Palmer Z, Levy B, Daly J, Parang K, Schmidt M, Buxton D, Heetderks W, Manabe YC, Soni A, McManus D. Design, creation, and use of the Test Us Bank (TUB) COVID-19 sample biorepository. BMC Infect Dis. 2024 Nov 12;24(1):1282. doi: 10.1186/s12879-024-10154-0. PMID: 39528968; PMCID: PMC11556042.

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DOI
10.1186/s12879-024-10154-0
PubMed ID
39528968
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© The Author(s) 2024. Open Access: This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.Attribution 4.0 International