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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP [preprint]

Carbone, Christine E.
Loveland, Anna B.
Gamper, Jr., Howard
Hou, Ya-Ming
Demo, Gabriel
Korostelev, Andrei A.
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Abstract

During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ∼20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation.

Source

bioRxiv 2021.05.31.446434; doi: https://doi.org/10.1101/2021.05.31.446434. Link to preprint on bioRxiv.

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10.1101/2021.05.31.446434
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This article is a preprint. Preprints are preliminary reports of work that have not been certified by peer review.

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Now published in Nature Communications doi: 10.1038/s41467-021-27415-0

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.