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Chromatin 'programming' by sequence - is there more to the nucleosome code than %GC
Hughes, Amanda ; Rando, Oliver J.
Hughes, Amanda
Rando, Oliver J.
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Student Authors
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UMass Chan Affiliations
Document Type
Journal Article
Publication Date
2009-12-23
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Abstract
The role of genomic sequence in directing the packaging of eukaryotic genomes into chromatin has been the subject of considerable recent debate. A new paper from Tillo and Hughes shows that the intrinsic thermodynamic preference of a given sequence in the yeast genome for the histone octamer can largely be captured with a simple model, and in fact is mostly explained by %GC. Thus, the rules for predicting nucleosome occupancy from genomic sequence are much less complicated than has been claimed.
Source
J Biol. 2009 Dec 23;8(11):96. Link to article on publisher's site
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DOI
10.1186/jbiol207
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PubMed ID
20067596