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Diatrack particle tracking software: Review of applications and performance evaluation

Vallotton, Pascal
van Oijen, Antoine M.
Whitchurch, Cynthia B.
Gelfand, Vladimir
Yeo, Leslie
Tsiavaliaris, Georgios
Heinrich, Stephanie
Dultz, Elisa
Weis, Karsten
Grunwald, David
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Abstract

Object tracking is an instrumental tool supporting studies of cellular trafficking. There are three challenges in object tracking: the identification of targets; the precise determination of their position and boundaries; and the assembly of correct trajectories. This last challenge is particularly relevant when dealing with densely populated images with low signal-to-noise ratios-conditions that are often encountered in applications such as organelle tracking, virus particle tracking or single-molecule imaging. We have developed a set of methods that can handle a wide variety of signal complexities. They are compiled into a free software package called Diatrack. Here we review its main features and utility in a range of applications, providing a survey of the dynamic imaging field together with recommendations for effective use. The performance of our framework is shown to compare favorably to a wide selection of custom-developed algorithms, whether in terms of localization precision, processing speed or correctness of tracks.

Source

Traffic. 2017 Dec;18(12):840-852. doi: 10.1111/tra.12530. Epub 2017 Oct 23. Link to article on publisher's site

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10.1111/tra.12530
PubMed ID
28945316
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