HiTC : Exploration of High-Throughput 'C' experiments
Servant, Nicolas Lajoie, Bryan R. Nora, Elphege P. Giorgetti, Luca Chen, Chongjian Heard, Edith Dekker, Job Barillot, Emmanuel
Servant, Nicolas
Lajoie, Bryan R.
Nora, Elphege P.
Giorgetti, Luca
Chen, Chongjian
Heard, Edith
Dekker, Job
Barillot, Emmanuel
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UMass Chan Affiliations
Document Type
Journal Article
Publication Date
2012-11-01
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Abstract
The R/Bioconductor package HiTC facilitates the exploration of high-throughtput 3C-based data. It allows users to import and export 'C' data, to transform, normalize, annotate and visualize interaction maps. The package operates within the Bioconductor framework, and thus offers new opportunities for future development in this field.Availability and Implementation: The R package HiTC is available from the Bioconductor web site. A detailed vignette provides additional documentation and help for using the package.
Source
Bioinformatics. 2012 Nov 1;28(21):2843-4. doi: 10.1093/bioinformatics/bts521
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DOI
10.1093/bioinformatics/bts521
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PubMed ID
22923296