MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text
Ryan, Joel ; Pengo, Thomas ; Rigano, Alex ; Llopis, Paula Montero ; Itano, Michelle S. ; Cameron, Lisa A. ; Marques, Guillermo ; Strambio-De-Castillia, Caterina ; Sanders, Mark A. ; Brown, Claire M.
Citations
Student Authors
Faculty Advisor
Academic Program
UMass Chan Affiliations
Document Type
Publication Date
Subject Area
Embargo Expiration Date
Link to Full Text
Abstract
roper reporting of metadata is essential to reproduce microscopy experiments, interpret results and share images. The lack of methods reporting in microscopy is evident in that few research articles pass a test for the minimal information required to reproduce experiments (about 17% of 240 articles containing 1,500 figures with images). The problem is compounded by the number and variety of microscope modalities, options and associated components. Automation has distanced researchers from the technical parameters, so it can be difficult for them to know what information needs to be reported. MethodsJ2 is an ImageJ/Fiji-based software tool that aims to improve reproducibility in microscopy by capturing image metadata from multiple sources, consolidating it and automatically generating methods text for publication.
Source
Ryan J, Pengo T, Rigano A, Llopis PM, Itano MS, Cameron LA, Marqués G, Strambio-De-Castillia C, Sanders MA, Brown CM. MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text. Nat Methods. 2021 Oct 15. doi: 10.1038/s41592-021-01290-5. Epub ahead of print. PMID: 34654919. Link to article on publisher's site