Dynamics of human protein kinase Aurora A linked to drug selectivity
Pitsawong, Warintra ; Buosi, Vanessa ; Otten, Renee ; Agafonov, Roman V. ; Zorba, Adelajda ; Kern, Nadja ; Kutter, Steffen ; Kern, Gunther ; Padua, Ricardo Ap ; Meniche, Xavier ... show 1 more
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Abstract
Protein kinases are major drug targets, but the development of highly-selective inhibitors has been challenging due to the similarity of their active sites. The observation of distinct structural states of the fully-conserved Asp-Phe-Gly (DFG) loop has put the concept of conformational selection for the DFG-state at the center of kinase drug discovery. Recently, it was shown that Gleevec selectivity for the Tyr-kinase Abl was instead rooted in conformational changes after drug binding. Here, we investigate whether protein dynamics after binding is a more general paradigm for drug selectivity by characterizing the binding of several approved drugs to the Ser/Thr-kinase Aurora A. Using a combination of biophysical techniques, we propose a universal drug-binding mechanism, that rationalizes selectivity, affinity and long on-target residence time for kinase inhibitors. These new concepts, where protein dynamics in the drug-bound state plays the crucial role, can be applied to inhibitor design of targets outside the kinome.
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Elife. 2018 Jun 14;7. pii: 36656. doi: 10.7554/eLife.36656. Link to article on publisher's site