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dc.contributor.authorHung, Jui-Hung
dc.contributor.authorWeng, Zhiping
dc.date2022-08-11T08:07:58.000
dc.date.accessioned2022-08-23T15:37:51Z
dc.date.available2022-08-23T15:37:51Z
dc.date.issued2016-08-29
dc.date.submitted2017-01-27
dc.identifier.citationCold Spring Harb Protoc. 2016 Aug 29. doi: 10.1101/pdb.prot093112. <a href="http://dx.doi.org/10.1101/pdb.prot093112">Link to article on publisher's site</a>
dc.identifier.issn1559-6095 (Linking)
dc.identifier.doi10.1101/pdb.prot093112
dc.identifier.pmid27574201
dc.identifier.urihttp://hdl.handle.net/20.500.14038/25809
dc.description.abstractBecause there is no widely used software for analyzing RNA-seq data that has a graphical user interface, this protocol provides an example of analyzing microarray data using Babelomics. This analysis entails performing quantile normalization and then detecting differentially expressed genes associated with the transgenesis of a human oncogene c-Myc in mice. Finally, hierarchical clustering is performed on the differentially expressed genes using the Cluster program, and the results are visualized using TreeView.
dc.language.isoen_US
dc.relation<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&list_uids=27574201&dopt=Abstract">Link to Article in PubMed</a>
dc.relation.urlhttp://dx.doi.org/10.1101/pdb.prot093112
dc.subjectBioinformatics
dc.subjectComputational Biology
dc.titleAnalyzing Microarray Data
dc.typeJournal Article
dc.source.journaltitleCold Spring Harbor protocols
dc.identifier.legacycoverpagehttps://escholarship.umassmed.edu/bioinformatics_pubs/100
dc.identifier.contextkey9590773
html.description.abstract<p>Because there is no widely used software for analyzing RNA-seq data that has a graphical user interface, this protocol provides an example of analyzing microarray data using Babelomics. This analysis entails performing quantile normalization and then detecting differentially expressed genes associated with the transgenesis of a human oncogene c-Myc in mice. Finally, hierarchical clustering is performed on the differentially expressed genes using the Cluster program, and the results are visualized using TreeView.</p>
dc.identifier.submissionpathbioinformatics_pubs/100
dc.contributor.departmentDepartment of Biochemistry and Molecular Pharmacology
dc.contributor.departmentProgram in Bioinformatics and Integrative Biology


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