Identifying Regions Enriched in a ChIP-seq Data Set (Peak Finding)
| dc.contributor.author | Hung, Jui-Hung | |
| dc.contributor.author | Weng, Zhiping | |
| dc.date | 2022-08-11T08:07:58.000 | |
| dc.date.accessioned | 2022-08-23T15:37:52Z | |
| dc.date.available | 2022-08-23T15:37:52Z | |
| dc.date.issued | 2017-02-01 | |
| dc.date.submitted | 2017-01-27 | |
| dc.identifier.citation | Cold Spring Harb Protoc. 2017 Feb 1;2017(2):pdb.prot093187. doi: 10.1101/pdb.prot093187. <a href="http://dx.doi.org/10.1101/pdb.prot093187">Link to article on publisher's site</a> | |
| dc.identifier.issn | 1559-6095 (Linking) | |
| dc.identifier.doi | 10.1101/pdb.prot093187 | |
| dc.identifier.pmid | 27574193 | |
| dc.identifier.uri | http://hdl.handle.net/20.500.14038/25814 | |
| dc.description.abstract | This protocol demonstrates how to use MACS software to call peaks in a ChIP-seq data set. MACS is one of the most widely used peak-calling programs. The protocol describes how to run MACS in a UNIX environment and on Galaxy and how to extract the sequences of +/-50 bp around the summits of the 500 MACS peaks with the most significant P values. | |
| dc.language.iso | en_US | |
| dc.relation | <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&list_uids=27574193&dopt=Abstract">Link to Article in PubMed</a> | |
| dc.relation.url | http://dx.doi.org/10.1101/pdb.prot093187 | |
| dc.subject | Bioinformatics | |
| dc.subject | Computational Biology | |
| dc.title | Identifying Regions Enriched in a ChIP-seq Data Set (Peak Finding) | |
| dc.type | Journal Article | |
| dc.source.journaltitle | Cold Spring Harbor protocols | |
| dc.source.volume | 2017 | |
| dc.source.issue | 2 | |
| dc.identifier.legacycoverpage | https://escholarship.umassmed.edu/bioinformatics_pubs/105 | |
| dc.identifier.contextkey | 9590778 | |
| html.description.abstract | <p>This protocol demonstrates how to use MACS software to call peaks in a ChIP-seq data set. MACS is one of the most widely used peak-calling programs. The protocol describes how to run MACS in a UNIX environment and on Galaxy and how to extract the sequences of +/-50 bp around the summits of the 500 MACS peaks with the most significant P values.</p> | |
| dc.identifier.submissionpath | bioinformatics_pubs/105 | |
| dc.contributor.department | Department of Biochemistry and Molecular Pharmacology | |
| dc.contributor.department | Program in Bioinformatics and Integrative Biology | |
| dc.source.pages | pdb.prot093187 |