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The Chlamydomonas genome project: a decade on

dc.contributor.authorBlaby, Ian K.
dc.contributor.authorWitman, George B.
dc.contributor.authorProchnik, Simon
dc.date2022-08-11T08:08:03.000
dc.date.accessioned2022-08-23T15:40:42Z
dc.date.available2022-08-23T15:40:42Z
dc.date.issued2014-10-01
dc.date.submitted2015-04-01
dc.identifier.citationTrends Plant Sci. 2014 Oct;19(10):672-80. doi: 10.1016/j.tplants.2014.05.008. <a href="http://dx.doi.org/10.1016/j.tplants.2014.05.008">Link to article on publisher's site</a>.
dc.identifier.issn1360-1385 (Linking)
dc.identifier.doi10.1016/j.tplants.2014.05.008
dc.identifier.pmid24950814
dc.identifier.urihttp://hdl.handle.net/20.500.14038/26460
dc.description<p>Full author list omitted for brevity. For the full list of authors, see article.</p>
dc.description.abstractThe green alga Chlamydomonas reinhardtii is a popular unicellular organism for studying photosynthesis, cilia biogenesis, and micronutrient homeostasis. Ten years since its genome project was initiated an iterative process of improvements to the genome and gene predictions has propelled this organism to the forefront of the omics era. Housed at Phytozome, the plant genomics portal of the Joint Genome Institute (JGI), the most up-to-date genomic data include a genome arranged on chromosomes and high-quality gene models with alternative splice forms supported by an abundance of whole transcriptome sequencing (RNA-Seq) data. We present here the past, present, and future of Chlamydomonas genomics. Specifically, we detail progress on genome assembly and gene model refinement, discuss resources for gene annotations, functional predictions, and locus ID mapping between versions and, importantly, outline a standardized framework for naming genes.
dc.language.isoen_US
dc.relation<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&list_uids=24950814&dopt=Abstract">Link to Article in PubMed</a>
dc.relation.urlhttp://dx.doi.org/10.1016/j.tplants.2014.05.008
dc.subjectPlant Sciences
dc.titleThe Chlamydomonas genome project: a decade on
dc.typeJournal Article
dc.source.journaltitleTrends in plant science
dc.source.volume19
dc.source.issue10
dc.identifier.legacycoverpagehttps://escholarship.umassmed.edu/cellbiology_pp/145
dc.identifier.contextkey6929795
html.description.abstract<p>The green alga Chlamydomonas reinhardtii is a popular unicellular organism for studying photosynthesis, cilia biogenesis, and micronutrient homeostasis. Ten years since its genome project was initiated an iterative process of improvements to the genome and gene predictions has propelled this organism to the forefront of the omics era. Housed at Phytozome, the plant genomics portal of the Joint Genome Institute (JGI), the most up-to-date genomic data include a genome arranged on chromosomes and high-quality gene models with alternative splice forms supported by an abundance of whole transcriptome sequencing (RNA-Seq) data. We present here the past, present, and future of Chlamydomonas genomics. Specifically, we detail progress on genome assembly and gene model refinement, discuss resources for gene annotations, functional predictions, and locus ID mapping between versions and, importantly, outline a standardized framework for naming genes.</p>
dc.identifier.submissionpathcellbiology_pp/145
dc.contributor.departmentDepartment of Cell and Developmental Biology
dc.source.pages672-80


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