Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

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Authors
Hammer, Mathias
Huisman, Maximiliaan
Rigano, Alessandro
Farzam, Farzin
Grunwald, David
Strambio-De-Castillia, Caterina
UMass Chan Affiliations
Program in Molecular Medicine
RNA Therapeutics Institute
Document Type
Journal Article
Publication Date
2021-12-03
Keywords
Data acquisition
Data publication and archiving
Fluorescence imaging
Image processing
Standards
Bioimaging and Biomedical Optics
Bioinformatics
Data Science
Research Methods in Life Sciences

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https://doi.org/10.1038/s41592-021-01327-9
Abstract
Rigorous record-keeping and quality control are required to ensure the quality, reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy Metadata Specifications that extend the OME Data Model, scale with experimental intent and complexity, and make it possible for scientists to create comprehensive records of imaging experiments.
Source

Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, Grunwald D, Strambio-De-Castillia C. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model. Nat Methods. 2021 Dec;18(12):1427-1440. doi: 10.1038/s41592-021-01327-9. Erratum in: Nat Methods. 2022 Jan 3;: PMID: 34862501. Link to article on publisher's site
DOI
10.1038/s41592-021-01327-9
Permanent Link to this Item
http://hdl.handle.net/20.500.14038/29948
PubMed ID
34862501
Notes

Full author list omitted for brevity. For the full list of authors, see article.

This article is based on a previously available preprint in bioRxiv.
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