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Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

dc.contributor.authorHammer, Mathias
dc.contributor.authorHuisman, Maximiliaan
dc.contributor.authorRigano, Alessandro
dc.contributor.authorFarzam, Farzin
dc.contributor.authorGrunwald, David
dc.contributor.authorStrambio-De-Castillia, Caterina
dc.date2022-08-11T08:08:28.000
dc.date.accessioned2022-08-23T15:56:20Z
dc.date.available2022-08-23T15:56:20Z
dc.date.issued2021-12-03
dc.date.submitted2022-01-24
dc.identifier.citation<p>Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, Grunwald D, Strambio-De-Castillia C. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model. Nat Methods. 2021 Dec;18(12):1427-1440. doi: 10.1038/s41592-021-01327-9. Erratum in: Nat Methods. 2022 Jan 3;: PMID: 34862501. <a href="https://doi.org/10.1038/s41592-021-01327-9">Link to article on publisher's site</a></p>
dc.identifier.issn1548-7091 (Linking)
dc.identifier.doi10.1038/s41592-021-01327-9
dc.identifier.pmid34862501
dc.identifier.urihttp://hdl.handle.net/20.500.14038/29948
dc.description<p>Full author list omitted for brevity. For the full list of authors, see article.</p> <p>This article is based on a previously available preprint in <a href="https://doi.org/10.1101/2021.04.25.441198" target="_blank" title="view preprint in bioRxiv">bioRxiv</a>.</p>
dc.description.abstractRigorous record-keeping and quality control are required to ensure the quality, reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy Metadata Specifications that extend the OME Data Model, scale with experimental intent and complexity, and make it possible for scientists to create comprehensive records of imaging experiments.
dc.language.isoen_US
dc.relation<p><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&list_uids=34862501&dopt=Abstract">Link to Article in PubMed</a></p>
dc.relation.urlhttps://doi.org/10.1038/s41592-021-01327-9
dc.subjectData acquisition
dc.subjectData publication and archiving
dc.subjectFluorescence imaging
dc.subjectImage processing
dc.subjectStandards
dc.subjectBioimaging and Biomedical Optics
dc.subjectBioinformatics
dc.subjectData Science
dc.subjectResearch Methods in Life Sciences
dc.titleTowards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
dc.typeJournal Article
dc.source.journaltitleNature methods
dc.source.volume18
dc.source.issue12
dc.identifier.legacyfulltexthttps://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=3184&amp;context=faculty_pubs&amp;unstamped=1
dc.identifier.legacycoverpagehttps://escholarship.umassmed.edu/faculty_pubs/2151
dc.identifier.contextkey27725960
refterms.dateFOA2022-08-23T15:56:21Z
html.description.abstract<p>Rigorous record-keeping and quality control are required to ensure the quality, reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy Metadata Specifications that extend the OME Data Model, scale with experimental intent and complexity, and make it possible for scientists to create comprehensive records of imaging experiments.</p>
dc.identifier.submissionpathfaculty_pubs/2151
dc.contributor.departmentProgram in Molecular Medicine
dc.contributor.departmentRNA Therapeutics Institute
dc.source.pages1427-1440


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