Yeast Upf1 CH domain interacts with Rps26 of the 40S ribosomal subunit
UMass Chan Affiliations
Department of Microbiology and Physiological SystemsDocument Type
Journal ArticlePublication Date
2013-08-01Keywords
Adenosine TriphosphatasesCodon, Nonsense
Models, Molecular
Mutagenesis, Site-Directed
Nonsense Mediated mRNA Decay
Protein Interaction Domains and Motifs
Protein Subunits
RNA Helicases
RNA, Fungal
Ribosomal Proteins
Saccharomyces cerevisiae
Saccharomyces cerevisiae Proteins
NMD
RNA helicase
ribosomal proteins
Amino Acids, Peptides, and Proteins
Biochemistry
Fungi
Nucleic Acids, Nucleotides, and Nucleosides
Metadata
Show full item recordAbstract
The central nonsense-mediated mRNA decay (NMD) regulator, Upf1, selectively targets nonsense-containing mRNAs for rapid degradation. In yeast, Upf1 preferentially associates with mRNAs that are NMD substrates, but the mechanism of its selective retention on these mRNAs has yet to be elucidated. Previously, we demonstrated that Upf1 associates with 40S ribosomal subunits. Here, we define more precisely the nature of this association using conventional and affinity-based purification of ribosomal subunits, and a two-hybrid screen to identify Upf1-interacting ribosomal proteins. Upf1 coimmunoprecipitates specifically with epitope-tagged 40S ribosomal subunits, and Upf1 association with high-salt washed or puromycin-released 40S subunits was found to occur without simultaneous eRF1, eRF3, Upf2, or Upf3 association. Two-hybrid analyses and in vitro binding assays identified a specific interaction between Upf1 and Rps26. Using mutations in domains of UPF1 known to be crucial for its function, we found that Upf1:40S association is modulated by ATP, and Upf1:Rps26 interaction is dependent on the N-terminal Upf1 CH domain. The specific association of Upf1 with the 40S subunit is consistent with the notion that this RNA helicase not only triggers rapid decay of nonsense-containing mRNAs, but may also have an important role in dissociation of the premature termination complex.Source
Min EE, Roy B, Amrani N, He F, Jacobson A. Yeast Upf1 CH domain interacts with Rps26 of the 40S ribosomal subunit. RNA. 2013 Aug;19(8):1105-15. doi:10.1261/rna.039396.113. Link to article on publisher's site
DOI
10.1261/rna.039396.113Permanent Link to this Item
http://hdl.handle.net/20.500.14038/30146PubMed ID
23801788Related Resources
ae974a485f413a2113503eed53cd6c53
10.1261/rna.039396.113
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