DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC
Smith, Corey Lewis
Grill, Stephan W.
Smith, Steven B.
Cairns, Bradley R.
Peterson, Craig L.
UMass Chan AffiliationsProgram in Molecular Medicine
Program in Gene Function and Expression
Graduate School of Biomedical Sciences
Document TypeJournal Article
KeywordsAdenosine Triphosphate; Animals; Chickens; *Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; DNA; DNA-Binding Proteins; Models, Biological; Models, Molecular; *Nucleic Acid Conformation; Nucleosomes; Optical Tweezers; Saccharomyces cerevisiae Proteins; Stress, Mechanical; Tandem Repeat Sequences; Transcription Factors
Medicine and Health Sciences
MetadataShow full item record
AbstractATP-dependent chromatin-remodeling complexes (remodelers) modulate gene transcription by regulating the accessibility of highly packaged genomic DNA. However, the molecular mechanisms involved at the nucleosomal level in this process remain controversial. Here, we monitor the real-time activity of single ySWI/SNF or RSC complexes on single, stretched nucleosomal templates under tensions above 1 pN forces. We find that these remodelers can translocate along DNA at rates of approximately 13 bp/s and generate forces up to approximately 12 pN, producing DNA loops of a broad range of sizes (20-1200 bp, average approximately 100 bp) in a nucleosome-dependent manner. This nucleosome-specific activity differs significantly from that on bare DNA observed under low tensions and suggests a nucleosome-remodeling mechanism through intranucleosomal DNA loop formation. Such loop formation may provide a molecular basis for the biological functions of remodelers.
SourceMol Cell. 2006 Nov 17;24(4):559-68. Link to article on publisher's site
Permanent Link to this Itemhttp://hdl.handle.net/20.500.14038/34005
Related ResourcesLink to Article in PubMed