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    The 4D nucleome project

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    Authors
    Dekker, Job
    Belmont, Andrew S.
    Guttman, Mitchell
    Leshyk, Victor O.
    Lis, John T.
    Lomvardas, Stavros
    Mirny, Leonid A.
    O'Shea, Clodagh C.
    Park, Peter J.
    Ren, Bing
    Ritland Politz, Joan C.
    Shendure, Jay
    Zhong, Sheng
    4D Nucleome Network
    Parsi, Krishna M.
    Maehr, Rene
    Sontheimer, Erik J.
    Grunwald, David
    Kaufman, Paul D.
    Zhu, Lihua (Julie)
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    UMass Chan Affiliations
    Department of Molecular, Cell and Cancer Biology
    RNA Therapeutics Institute
    Program in Molecular Medicine
    Department of Biochemistry and Molecular Pharmacology
    Program in Systems Biology
    Document Type
    Journal Article
    Publication Date
    2017-09-13
    Keywords
    Epigenomics
    Gene regulation
    Biophysics
    Computational Biology
    Genomics
    Structural Biology
    Systems Biology
    
    Metadata
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    Link to Full Text
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5617335/
    Abstract
    The 4D Nucleome Network aims to develop and apply approaches to map the structure and dynamics of the human and mouse genomes in space and time with the goal of gaining deeper mechanistic insights into how the nucleus is organized and functions. The project will develop and benchmark experimental and computational approaches for measuring genome conformation and nuclear organization, and investigate how these contribute to gene regulation and other genome functions. Validated experimental technologies will be combined with biophysical approaches to generate quantitative models of spatial genome organization in different biological states, both in cell populations and in single cells.
    Source

    Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network. The 4D nucleome project. Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Erratum in: Nature. 2017 Nov 22;: PMID: 28905911; PMCID: PMC5617335. Link to article on publisher's site

    DOI
    10.1038/nature23884
    Permanent Link to this Item
    http://hdl.handle.net/20.500.14038/49841
    PubMed ID
    28905911
    Notes

    Members of the 4D Nucleome Network from UMass Medical School who collaborated on this project include Krishna M. Parsi, Rene Maehr, Erik J. Sontheimer, David Grunwald, Paul D. Kaufman, and Lihua (Julie) Zhu.

    This article is based on a previously available preprint on bioRxiv that is also available in eScholarship@UMMS.

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    10.1038/nature23884
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