Community-developed checklists for publishing images and image analyses
Authors
Schmied, ChristopherNelson, Michael S
Avilov, Sergiy
Bakker, Gert-Jan
Bertocchi, Cristina
Bischof, Johanna
Boehm, Ulrike
Brocher, Jan
Carvalho, Mariana T
Chiritescu, Catalin
Christopher, Jana
Cimini, Beth A
Conde-Sousa, Eduardo
Ebner, Michael
Ecker, Rupert
Eliceiri, Kevin
Fernandez-Rodriguez, Julia
Gaudreault, Nathalie
Gelman, Laurent
Grunwald, David
Gu, Tingting
Halidi, Nadia
Hammer, Mathias
Hartley, Matthew
Held, Marie
Jug, Florian
Kapoor, Varun
Koksoy, Ayse Aslihan
Lacoste, Judith
Le Dévédec, Sylvia
Le Guyader, Sylvie
Liu, Penghuan
Martins, Gabriel G
Mathur, Aastha
Miura, Kota
Montero Llopis, Paula
Nitschke, Roland
North, Alison
Parslow, Adam C
Payne-Dwyer, Alex
Plantard, Laure
Ali, Rizwan
Schroth-Diez, Britta
Schütz, Lucas
Scott, Ryan T
Seitz, Arne
Selchow, Olaf
Sharma, Ved P
Spitaler, Martin
Srinivasan, Sathya
Strambio-De-Castillia, Caterina
Taatjes, Douglas
Tischer, Christian
Jambor, Helena Klara
Document Type
Journal ArticlePublication Date
2023-09-14
Metadata
Show full item recordAbstract
Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However, for scientists wishing to publish obtained images and image-analysis results, there are currently no unified guidelines for best practices. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here, we present community-developed checklists for preparing light microscopy images and describing image analyses for publications. These checklists offer authors, readers and publishers key recommendations for image formatting and annotation, color selection, data availability and reporting image-analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby to heighten the quality and explanatory power of microscopy data.Source
Schmied C, Nelson MS, Avilov S, Bakker GJ, Bertocchi C, Bischof J, Boehm U, Brocher J, Carvalho MT, Chiritescu C, Christopher J, Cimini BA, Conde-Sousa E, Ebner M, Ecker R, Eliceiri K, Fernandez-Rodriguez J, Gaudreault N, Gelman L, Grunwald D, Gu T, Halidi N, Hammer M, Hartley M, Held M, Jug F, Kapoor V, Koksoy AA, Lacoste J, Le Dévédec S, Le Guyader S, Liu P, Martins GG, Mathur A, Miura K, Montero Llopis P, Nitschke R, North A, Parslow AC, Payne-Dwyer A, Plantard L, Ali R, Schroth-Diez B, Schütz L, Scott RT, Seitz A, Selchow O, Sharma VP, Spitaler M, Srinivasan S, Strambio-De-Castillia C, Taatjes D, Tischer C, Jambor HK. Community-developed checklists for publishing images and image analyses. Nat Methods. 2024 Feb;21(2):170-181. doi: 10.1038/s41592-023-01987-9. Epub 2023 Sep 14. PMID: 37710020; PMCID: PMC10922596.DOI
10.1038/s41592-023-01987-9Permanent Link to this Item
http://hdl.handle.net/20.500.14038/53539PubMed ID
37710020Rights
© 2023. Springer Nature America, Inc.ae974a485f413a2113503eed53cd6c53
10.1038/s41592-023-01987-9